References

Datasets curated and shared

  1. The NIMH Healthy Research Volunteer Dataset
  2. Structural MRI scans in autism during early childhood in BIDS format #1887
  3. Emotion and Development Branch Phenotyping and DTI (2012-2017)
  4. Haptic three-dimensional curved surface exploration fMRI dataset

Publications

  1. Jangraw DC, Keren H, Sun H, Bedder RL, Rutledge RB, Pereira F, Thomas AG, Pine DS, Zheng C, Nielson DM, Stringaris A (2023). A highly replicable decline in mood during rest and simple tasks. Nat Hum Behav 7, 596-610. https://doi.org/10.1038/s41562-023-01519-7

  2. McClure PS, Moraczewski DE, Lam K, Thomas AG, Pereira F (2023). Improving the Interpretability of fMRI Decoding Using Deep Neural Networks and Adversarial Robustness. Aperture Neuro . https://doi.org/10.52294/001c.85074

  3. Taylor PA, Glen DR, Reynolds RC, Basavaraj A, Moraczewski D, Etzel JA (2023). Editorial: Demonstrating quality control (QC) procedures in fMRI. Front Neurosci 17, 1205928. https://doi.org/10.3389/fnins.2023.1205928

  4. Goyal N, Moraczewski D, Bandettini PA, Finn ES, Thomas AG (2022). The positive-negative mode link between brain connectivity, demographics and behaviour: a pre-registered replication of Smith et al. (2015). R Soc Open Sci 9, 201090. https://doi.org/10.1098/rsos.201090

  5. Nugent, A.C., Thomas, A.G., Mahoney, M. et al. The NIMH intramural healthy volunteer dataset: A comprehensive MEG, MRI, and behavioral resource. Sci Data 9, 518 (2022). https://doi.org/10.1038/s41597-022-01623-9

  6. Norgaard M, Matheson GJ, Hansen HD, Thomas A, Searle G, Rizzo G, Veronese M, Giacomel A, Yaqub M, Tonietto M, Funck T, Gillman A, Boniface H, Routier A, Dalenberg JR, Betthauser T, Feingold F, Markiewicz CJ, Gorgolewski KJ, Blair RW, Appelhoff S, Gau R, Salo T, Niso G, Pernet C, et al. [7 more authors] (2022). PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. Sci Data 9, 65. https://doi.org/10.1038/s41597-022-01164-1

  7. Knudsen GM, Ganz M, Appelhoff S, Boellaard R, Bormans G, Carson RE, Catana C, Doudet D, Gee AD, Greve DN, Gunn RN, Halldin C, Herscovitch P, Huang H, Keller SH, Lammertsma AA, Lanzenberger R, Liow JS, Lohith TG, Lubberink M, Lyoo CH, Mann JJ, Matheson GJ, Nichols TE, Nørgaard M, et al. [19 more authors] (2020). Guidelines for the content and format of PET brain data in publications and archives: A consensus paper. J Cereb Blood Flow Metab 40, 1576-1585. https://doi.org/10.1177/0271678X20905433

  8. Esteban O, Blair RW, Nielson DM, Varada JC, Marrett S, Thomas AG, Poldrack RA, Gorgolewski KJ (2019). Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines. Sci Data 6, 30. https://doi.org/10.1038/s41597-019-0035-4

  9. McClure P, Rho N, Lee JA, Kaczmarzyk JR, Zheng CY, Ghosh SS, Nielson DM, Thomas AG, Bandettini P, Pereira F (2019). Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks. Front Neuroinform 13, 67. https://doi.org/10.3389/fninf.2019.00067

  10. Popescu T, Sader E, Schaer M, Thomas A, Terhune DB, Dowker A, Mars RB, Cohen Kadosh R (2019). The brain-structural correlates of mathematical expertise. Cortex 114, 140-150. https://doi.org/10.1016/j.cortex.2018.10.009

  11. Sallet J, Noonan MP, Thomas A, O'Reilly JX, Anderson J, Papageorgiou GK, Neubert FX, Ahmed B, Smith J, Bell AH, Buckley MJ, Roumazeilles L, Cuell S, Walton ME, Krug K, Mars RB, Rushworth MFS (2020). Behavioral flexibility is associated with changes in structure and function distributed across a frontal cortical network in macaques. PLoS Biol 18, e3000605. https://doi.org/10.1371/journal.pbio.3000605

  12. Ghosh SS, Poline JB, Keator DB, Halchenko YO, Thomas AG, Kessler DA, Kennedy DN (2017). A very simple, re-executable neuroimaging publication. F1000Res 6, 124. https://doi.org/10.12688/f1000research.10783.2

  13. Nantes JC, Thomas AG, Voets NL, Best JG, Rosenthal CR, Al-Diwani A, Irani SR, Stagg CJ (2018). Hippocampal Functional Dynamics Are Clinically Implicated in Autoimmune Encephalitis With Faciobrachial Dystonic Seizures. Front Neurol 9, 736. https://doi.org/10.3389/fneur.2018.00736

  14. Nielson DM, Sederberg PB (2017). MELD: Mixed effects for large datasets. PLoS One 12, e0182797. https://doi.org/10.1371/journal.pone.0182797

  15. Zhou D, Liu S, Zhou X, Berman R, Broadnax D, Gochman P, Rapoport J, Thomas AG (2018). 7 T MRI reveals hippocampal structural abnormalities associated with memory intrusions in childhood-onset schizophrenia. Schizophr Res 202, 431-432. https://doi.org/10.1016/j.schres.2018.07.023

  16. Hodgetts CJ, Voets NL, Thomas AG, Clare S, Lawrence AD, Graham KS (2017). Ultra-High-Field fMRI Reveals a Role for the Subiculum in Scene Perceptual Discrimination. J Neurosci 37, 3150-3159. https://doi.org/10.1523/JNEUROSCI.3225-16.2017

  17. Thomas AG, Dennis A, Rawlings NB, Stagg CJ, Matthews L, Morris M, Kolind SH, Foxley S, Jenkinson M, Nichols TE, Dawes H, Bandettini PA, Johansen-Berg H (2016). Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. Neuroimage 131, 162-70. https://doi.org/10.1016/j.neuroimage.2015.10.090

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  • Contributors
    • Arshitha Basavaraj